HsaEX6090941 @ hg19
Exon Skipping
Gene
ENSG00000138161 | CUZD1
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:17937]
Coordinates
chr10:124593188-124595866:-
Coord C1 exon
chr10:124595694-124595866
Coord A exon
chr10:124594222-124594613
Coord C2 exon
chr10:124593188-124593456
Length
392 bp
Sequences
Splice sites
3' ss Seq
AATTCTATCTCGTTCTGCAGGTA
3' ss Score
9.94
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CATCTTTAACTTGCTCTTCTGACAGGATGAGAGTTATTATAAGCAAATCCTACCTAGAGGCTTTTAACTCTAATGGGAATAACTTGCAACTAAAAGACCCAACTTGCAGACCAAAATTATCAAATGTTGTGGAATTTTCTGTCCCTCTTAATGGATGTGGTACAATCAGAAAG
Seq A exon
GTAGAAGATCAGTCAATTACTTACACCAATATAATCACCTTTTCTGCATCCTCAACTTCTGAAGTGATCACCCGTCAGAAACAACTCCAGATTATTGTGAAGTGTGAAATGGGACATAATTCTACAGTGGAGATAATATACATAACAGAAGATGATGTAATACAAAGTCAAAATGCACTGGGCAAATATAACACCAGCATGGCTCTTTTTGAATCCAATTCATTTGAAAAGACTATACTTGAATCACCATATTATGTGGATTTGAACCAAACTCTTTTTGTTCAAGTTAGTCTGCACACCTCAGATCCAAATTTGGTGGTGTTTCTTGATACCTGTAGAGCCTCTCCCACCTCTGACTTTGCATCTCCAACCTACGACCTAATCAAGAGTGG
Seq C2 exon
ATGTAGTCGAGATGAAACTTGTAAGGTGTATCCCTTATTTGGACACTATGGGAGATTCCAGTTTAATGCCTTTAAATTCTTGAGAAGTATGAGCTCTGTGTATCTGCAGTGTAAAGTTTTGATATGTGATAGCAGTGACCACCAGTCTCGCTGCAATCAAGGTTGTGTCTCCAGAAGCAAACGAGACATTTCTTCATATAAATGGAAAACAGATTCCATCATAGGACCCATTCGTCTGAAAAGGGATCGAAGTGCAAGTGGCAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(20.2=98.0)
A:
PF0010018=Zona_pellucida=PU(60.9=96.8)
C2:
PF0010018=Zona_pellucida=PD(38.4=63.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACCCAACTTGCAGACCA
R:
CCACTTGCACTTCGATCCCTT
Band lengths:
342-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)