RnoEX0025553 @ rn6
Exon Skipping
Gene
ENSRNOG00000029945 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:RGD Symbol;Acc:619771]
Coordinates
chr1:201882739-201885333:-
Coord C1 exon
chr1:201885233-201885333
Coord A exon
chr1:201884542-201884933
Coord C2 exon
chr1:201882739-201883007
Length
392 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTCCCATTCTGCAGATA
3' ss Score
9.7
5' ss Seq
CGGGTATGC
5' ss Score
7.73
Exon sequences
Seq C1 exon
ATTAAGGTCATGTCAGACCCAGCAGTAGCTCAAGTGAGCTTTGAACTTGTGATCTTTCTGCTTTAGCCTGCCTAGGAGCCTGTGCCAACAGGCCGGATCTG
Seq A exon
ATAGAGGACCACACTATCAGTTATACGAACATAATCACCTTCACCCAGTCTCCAGAATCTGCCGTGATCACCCGAAAGAGGCACCTTCAGATTGTGGTGACGTGTGAGATGGAGTATAATTCAACTGTGGAGATTCTGTACATAACCGAAGACGACGTCATACAAAATCAAAGTGTCCTGGGCAAATACAACACCAGCATGGCTCTTTATGAGTCCGGCTCCTTTGAAAACCTTATACAGGAGTCACCGTATTATGTAGATTTGAACCAAACCCTTTTTGTCCAAGCCACTTTGCACACCTCAGATCCAAGCCTGGTGGTGTTTCTGGACACTTGCAGAGCCTCTCCCACATCCGACTTTGCATCTCCAACCTATGACTTAATCAGCAGCGG
Seq C2 exon
GTGTAGTCGAGATGAGACCTGTAAGGTGTACCCCTTATTTGGGCACTACGGGAGATTCCAGTTCAATGCCTTTAAATTCTTGAGACATCTGAGTTCTGTGTATCTCAAGTGTAAGATTTTGATCTGTGATACCAGTGACCACACATCTCGCTGCAATCAAGGCTGCGTCTCAAGAAGGAAACGAGATATTCCTTCATACAAATGGAAGACTGATTCTGTTATAGGACCAATTCGCCTGAAGAGGGACCGACTTGTAAATGGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029945-'13-11,'13-10,14-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0010018=Zona_pellucida=FE(53.3=100)
C2:
PF0010018=Zona_pellucida=PD(23.8=63.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCAGACCCAGCAGTAGC
R:
ACAAGTCGGTCCCTCTTCAGG
Band lengths:
348-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]