GgaEX7006601 @ galGal4
Exon Skipping
Gene
ENSGALG00000023421 | CUZD1
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr6:30924692-30926703:+
Coord C1 exon
chr6:30924692-30924864
Coord A exon
chr6:30925697-30926082
Coord C2 exon
chr6:30926435-30926703
Length
386 bp
Sequences
Splice sites
3' ss Seq
TCACACAATTTCTTTTACAGGAT
3' ss Score
10.31
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CATCCCTTACGTGCTCTTCAGACAGAATGACAATTGTACTGAGCAAGGCTTACCTGGACTCCCTTGGCTATAATGAAACTCACCTACAGCTGAATGACCCATCTTGCAGGCCAGTTACAACAGACCAAGTGATCTTCTCCTTCCCACTAAGCAGCTGTGGAACAACTAAGAAG
Seq A exon
GATGAAGATCTGAGCATCACTTACACCAACGCCGTAACTATCTCTGAAAGTGGCAACGTCATCACCCGCAAAAAGATCGTACAGATCATCGCAAAATGCATAATGGAAAAGAATTCAACCCTAGAGGTCATTTATGTAACAGAAAACAACATAATCCAGAACACAGCCTCTGTGGGAAGATACAATGTTAGCATGTCATTCTATGATTCTGATTCATTCTCCAGCCCTGTACTCGAGTCCCCCTATTACGTAGACTTGAACCAAACCCTTTTTGCTCAAGTCAGTCTTCATTCCACTGACCCAAACCTTTTGGTGTTCATTGATACCTGCACAGCATCTCCACAATCGGATTTTGGATCGATAACATATGACTTGATCAGAAGTGG
Seq C2 exon
CTGTAAGAAAGATGACACTGTGGTAACATACCAACCCCTGGAGCACTATGGAAGATTCAGATTTAATGCCTTCAGGTTCCTGAGGAGAGCTCCGTCTGTTTATCTCCAGTGTGATGTTTTAATTTGTGACAGCAACAACGAGAGCTCTCGCTGTACCAAAGGCTGTGTCTCCAGGCAGAAGAGAGAGACTTCTTCATACACTTGGAAAACCAAGGCTGTAGTAGGTCCTATCCGCCTCAAACGAGACCGCAGGGCTGCTGATCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023421-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.3=93.1)
A:
PF0010018=Zona_pellucida=FE(52.9=100)
C2:
PF0010018=Zona_pellucida=PD(24.0=63.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCTGGACTCCCTTGGCT
R:
AGGACCTACTACAGCCTTGGT
Band lengths:
354-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]