MmuEX6014681 @ mm9
Exon Skipping
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:138453112-138458425:-
Coord C1 exon
chr7:138458253-138458425
Coord A exon
chr7:138455019-138455410
Coord C2 exon
chr7:138453112-138453380
Length
392 bp
Sequences
Splice sites
3' ss Seq
AATTCTTTCGCATTCTGCAGATA
3' ss Score
9.33
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CATCTCTAAGTTGTGTTTCTGACAAGATGAGAGTCATCATAAGCAAATCATACCTACCGGCACTCAACTACAATGAGAGCAATTTGCAGCTAAATGACCCAACTTGCAGACCGAATGTATCAAATGTCATAGAGTTCTCTATCCCTCTGCACGAATGCGGTACAGTCAAAAAG
Seq A exon
ATAGAGGACCACGCGATCAGCTATACCAACAGGATCACCTTCATCGAGTCTCCGGTCTCTGCTGTGATCACCCGACAGAAGCTCCTCCAGATCGTGGTGACCTGTGAGATGGAGTATAACTCTACCGTGGAGATTATGTACATAACTGAAGACGACATCATACAGAACCAGAGTGTCCTGGGCAAATACAACACCAGCCTGGCTCTCTATGAGTCCGACTCATTTGAAAACCTCGTACAGGAGTCACCATATTATGTAGACTTGAACCAGACTCTCTTTGTCCAAGCCACCTTGCACACCTCGGATCCAAGCCTGGTGGTGTTTCTGGATACTTGCAGAGCCTCGCCTACGTCTGACTTTGCATCTCCAACCTACGACTTAATCAGCAGCGG
Seq C2 exon
ATGTTGTCAAGATGAGACCTGTAAGGTGTATCCCTTATTTGGGCACTATGGAAGGTTCCAGTTTAATGCCTTTAAATTCTTGAAACATCTCAACTCTGTGTATCTCAAGTGTAAGATTTTGATATGTGATAACAATGACCAAACATCTCGCTGCAATCAAGGCTGTGTCCCAAGAAGGAAACGGGATATTCCTTCCTACAAATGGAAGACTGACTCTGTTATAGGACCCATTCGCCTGAAGAGGGACCGAAGTGCAAGTAGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.1=93.1)
A:
PF0010018=Zona_pellucida=FE(53.3=100)
C2:
PF0010018=Zona_pellucida=PD(23.8=63.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACCCAACTTGCAGACCG
R:
TCTACTTGCACTTCGGTCCCT
Band lengths:
343-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: