HsaEX6092261 @ hg38
Exon Skipping
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25 member 41 [Source:HGNC Symbol;Acc:HGNC:28533]
Coordinates
chr19:6426302-6427501:-
Coord C1 exon
chr19:6427334-6427501
Coord A exon
chr19:6427128-6427250
Coord C2 exon
chr19:6426302-6426561
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCCCTTCTCTTGCAGATG
3' ss Score
13.07
5' ss Seq
CTGGTGCGC
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGCTGAAGACGCGGTTGACCTTGCGTCGGACGGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCTTGCAGCGAGAGGGCACCCGCGCCCTTTACCGCGGCTACCTGCCCAATATGCTCGGCATCATCCCCTATGCCTGCACCGACCTGGCTGTCTATGAG
Seq A exon
ATGCTCCAGTGCTTCTGGGTGAAGTCAGGCAGGGATATGGGGGACCCCAGTGGCCTGGTCAGTCTGTCGTCTGTGACGCTATCCACGACCTGTGGCCAGATGGCCAGCTACCCACTGACTCTG
Seq C2 exon
ATACCGTGGAGGGCTCAAATCCCACCATGCGCGGAGTCCTCCAGCGGATCCTGGCCCAGCAGGGCTGGCTAGGGCTGTACCGAGGCATGACCCCCACGCTACTGAAGGTCTTACCAGCAGGTGGCATCAGCTATGTGGTGTACGAAGCCATGAAGAAAACCCTGGGCATATAGGCTGTGAGCTGGACGACACAGCCTAGGCAGAAATGGGACAGGAGGACCTGATGACCCCTGGCCCCAAAGAGCCCTCGAGGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-'10-7,'10-6,11-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.020 C2=0.035
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.7=72.0)
C2:
PF0015322=Mito_carr=PD(60.2=96.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCCCCTATGCCTGCAC
R:
CCCATTTCTGCCTAGGCTGTG
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains