MmuEX0042927 @ mm9
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57172196-57174377:-
Coord C1 exon
chr17:57174210-57174377
Coord A exon
chr17:57173143-57173290
Coord C2 exon
chr17:57172196-57172606
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGCCTCCTTTCGCAGCTA
3' ss Score
8.64
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTACTCAAGACTCGGCTGACCCTTCGCTTCACTGGCCAGTATAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAACGGGATGGTACCCGAGCCCTATACCGAGGCTACCTGCCCAACATGTTGGGCATCATCCCCTATGCTTGCACCGACCTAGCTGTTTATGAG
Seq A exon
CTACTCCAGTGCCTGTGGCAGAAGTTGGGCAGGGACATGAAGGACCCCAGTGGCCTCGTCAGCCTGTCATCTGTAACACTGTCCACGACCTGTGGCCAGATGGCCAGTTACCCACTGACTTTGGTGCGCACAAGGATGCAGGCTCAAG
Seq C2 exon
ACACTGTGGAGGGCTCCAACCCCACCATGCAGGGAGTCTTCAAGAGGATACTGAGCCAGCAGGGCTGGCCGGGGCTGTACAGAGGCATGACACCCACTTTACTGAAGGTGTTGCCAGCAGGCGGCATCAGCTACCTGGTGTATGAAGCCATGAAGAAAACCCTGGGTGTACAAGTCCTGAGCAGATGACCTGCCCTGAACAAGAAGAGAATGGAAGACCCAGTGTCCCTGAGTCTCAAAAAGCACTCCAAGGCTCAGGCTTTAAGGCCATTTTGGTTTGCAAAAACCACCCAGGACTCGGATTAGAAAAGCGCTGGGAGTCCTCCAATTGGGATTCTGAGTTGGGATTCCAGCCGGGTTTTTGCAGGCTTGTTCAAGAGAAGATGCAGACAATGAATAAAGATAGTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.032
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.3=72.0)
C2:
PF0015322=Mito_carr=PD(60.6=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTATACCGAGGCTACC
R:
TCAGGACTTGTACACCCAGGG
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: