DreEX6033905 @ danRer10
Exon Skipping
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54296540-54304063:-
Coord C1 exon
chr1:54303896-54304063
Coord A exon
chr1:54303309-54303459
Coord C2 exon
chr1:54296540-54301090
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTCCTCTGTCTCAGACG
3' ss Score
7.38
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTGCTGAAGACTCGGTTAACTCTGCGTAAAACGGGCCAGTATTCAAGCGTAGCAGACTGTGCCAAACAGATCCTGCAGAAGGAGGGCGTTCGGGCCTTTTATAAAGGCTACCTGCCAAACATGCTGGGCATCATCCCGTACGCGGGCATAGATCTCGCCGTCTATGAG
Seq A exon
ACGCTAAAGAACGCATGGCTGCAGAGGCACACTGAAGGCTCGGCGGACCCCGGGGTTCTGGTTTTGGTGGGCTGTGGGACGGTTTCCAGCACCTGTGGGCAGCTGGCGTCGTACCCGCTCGCACTCATACGCACACGCATGCAGGCGCAGG
Seq C2 exon
CGTCGATTAAGGGGGCTCCTCAGTTGTCCATGCTGACCCTGTTTAGAAGTATCGTGGCCCAGGAGGGCGTTGTGGGACTCTACCGAGGCATCGCTCCAAACTTCCTGAAGGTCATTCCTGCCGTCAGCATCTCCTACGTGGTCTACGAGCACATGAGGAAAGTACTGGGAGTGGGAACCTGAGAGAGAAAGACTGCATGAGTGTGTGTTTATAAAGGGAAAAAAACAGACACTATAGTTACATCCTTTATATGTCAAGAGAAGAAAGGAAAGGTCAAAGACTTGCTTATTTAAGCCTAAAATACCTAAAAAAAATCCCCTGCACTGGAGTTGTGATGATCAACTATCTGTGAGGAACTGATTGAAAAACACTGAAATATGCAGAATCTACGAGGTGCTGATCCAGGCCCGTTCATCATGTGTGTTTTTTATGTGTGTTGTTGATCAACAGGGCCCTGATATTCAGGTTTACAGGGTACGTTCCTGTGGACGCGGTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
C2:
PF0015322=Mito_carr=PD(61.1=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTAAAACGGGCCAGTAT
R:
TCAGGAAGTTTGGAGCGATGC
Band lengths:
255-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]