HsaEX6092267 @ hg19
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6440075-6452490:-
Coord C1 exon
chr19:6452323-6452490
Coord A exon
chr19:6444162-6444312
Coord C2 exon
chr19:6440075-6442170
Length
151 bp
Sequences
Splice sites
3' ss Seq
TACTCCCTTCTCCACTCCAGACT
3' ss Score
6.26
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCTGAAGACGCGGCTGACCTTGCGCCGGACGGGCCAGTATAAGGGGCTGCTGGACTGCGCCAGGCGTATCCTGGAGAGGGAGGGGCCCCGTGCCTTCTACCGCGGCTACCTCCCCAACGTGCTGGGCATCATCCCCTATGCGGGCATCGACCTGGCCGTCTACGAG
Seq A exon
ACTCTGAAGAACTGGTGGCTTCAGCAGTACAGCCACGACTCGGCAGACCCAGGCATCCTCGTGCTCCTGGCCTGCGGTACCATATCCAGCACCTGCGGCCAGATAGCCAGTTACCCGCTGGCCCTGGTCCGGACCCGCATGCAGGCACAAG
Seq C2 exon
CCTCCATCGAGGGTGGCCCCCAGCTGTCCATGCTGGGTCTGCTACGTCACATCCTGTCCCAGGAGGGCATGCGGGGCCTCTACCGGGGGATCGCCCCCAACTTCATGAAGGTTATTCCAGCTGTGAGCATCTCCTATGTGGTCTACGAGAACATGAAGCAGGCCTTGGGGGTCACGTCCAGGTGAGGGACCCGGAGCCCGTCCCCCCAATCCCTCACCCCCCACACCTCAGCCACTGGAGACTGATGATCCAACCACAGGATCCCTACTCTTTGGCCACGAGATCCCAGTACCCAGATCCTGGATCCTAGACTCCTATGCCCCAACCATTGGGTCATGGGATCCCAGCATCCAGATCCTGGATCCTAGACTCCTATGCCCCAACCACTGGGTCATGCGATCCCCACCCTTCAGCCACTAGATCCCAGATCCCCCTGTAACCATAACTGTGGATCCCTTACTTCAGCAACTCAAGTCTGCTACCCTAACCACAAGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-'8-10,'8-8,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(69.4=96.2)
A:
PF0015322=Mito_carr=PD(29.6=15.7),PF126173=LdpA_C=FE(59.5=100),PF0015322=Mito_carr=PU(59.0=70.6)
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTATAAGGGGCTGCTGGA
R:
AACCTTCATGAAGTTGGGGGC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)