Special

MmuEX6078691 @ mm9

Exon Skipping

Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57183134-57192272:-
Coord C1 exon
chr17:57192105-57192272
Coord A exon
chr17:57186609-57186759
Coord C2 exon
chr17:57183134-57185086
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCCTTTCTCTTCTAGACC
3' ss Score
12.35
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAATACAAGGGGCTCCTGGATTGTGCAAAGCGGATCTTAGAACGTGAAGGGCCCCGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATCCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
Seq A exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCCGCTAACCCAGGCATTCTCGTGCTCCTAGGCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
Seq C2 exon
CCTCCATTGAGGGTGGCCCGCAGGTCTCCATGGTGGGTCTACTTCGACACATCCTGTCCCAGGAGGGTGTATGGGGCCTCTACCGGGGCATTGCCCCCAACTTCATGAAGGTCATTCCAGCCGTGAGCATCTCCTACGTGGTCTACGAGAACATGAAGCAGGCTCTGGGGGTCACATCCAGGTGAGGGACAGGGAGCCTGTCCCCCTAAAACTCCCTCATCTTCATCATGGTATCCCCTACGCTGATATCTTCAACCACAGAGACTGATGGCCTGACCAGTGGATCCTAACCCCACACCCCAAGGCACTGGACCCCAGTACCCAAATCCCCGATCCTAGCCCTGTGTCCTGACCATGGTACCACTGCACCCCACACTTGAGCCACAGGATCCCAGGACTTGATCCCCAACTTCACAACCAGACCTCGAAGCCCCAACCACTGGACCCCACATATCAGCAGCCTGACACTTGATATGTAAAACTATCCATACCCTGGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-'10-15,'10-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.011 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0015322=Mito_carr=PU(81.0=97.9)

							
A:
PF0015322=Mito_carr=PD(17.2=19.6),PF0015322=Mito_carr=PU(62.5=68.6)

							
C2:
PF0015322=Mito_carr=PD(61.1=93.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000040198





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000128348, ENSMUSP00000132169, ENSMUSP00000132962
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:6444151-6444301 
HIGH PSI
HsaEX6092267
(SLC25A23)
Human
(hg19)
chr19:6444162-6444312 
HIGH PSI
HsaEX6092267
(SLC25A23)
Rat
(rn6)
chr9:9999278-9999428 
HIGH PSI
RnoEX0081857
(Slc25a23)
Cow
(bosTau6)
chr7:19246090-19246240 
Chicken
(galGal4)
chr17:4797776-4797926 
HIGH PSI
GgaEX1053087
(SLC25A25)
Chicken
(galGal3)
chr17:5432780-5432930 
HIGH PSI
GgaEX1053087
(F1NYW3_CHICK)
Zebrafish
(danRer10)
chr1:54303309-54303459 
HIGH PSI
DreEX6033905
(slc25a23a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TACAAGGGGCTCCTGGATTGT

				
R: 
CTCACGGCTGGAATGACCTTC

				
Band lengths: 
256-407

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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