GgaEX1053087 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5430822-5433506:-
Coord C1 exon
chr17:5433339-5433506
Coord A exon
chr17:5432780-5432930
Coord C2 exon
chr17:5430822-5430856
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTCTAGCTTGTTTCCTCCAGACA
3' ss Score
5.65
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTCTGAAAACACGGATGGCTCTGAGAAAGACAGGACAGTATTCAGGCATGTTGGATTGTGCCAAAAACATCCTTTCCAAGGAAGGAATGGCTGCCTTCTACAAAGGCTACATTCCCAACATGCTAGGAATCATTCCATATGCTGGGATTGACCTGGCAGTGTATGAG
Seq A exon
ACACTAAAAAATGCCTGGTTGCAACGCTATGCTGTCAACAGTGCTGACCCTGGAGTCTTTGTCCTCTTGGCCTGTGGCACCATATCCAGTACCTGCGGACAGCTTGCCAGTTACCCCCTGGCTCTTGTGAGGACACGCATGCAGGCCCAAG
Seq C2 exon
GATGGACCACCGTTGCATTCCACTGTTTTACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'12-18,'12-15,13-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(73.5=70.6)
C2:
PF0015322=Mito_carr=FE(22.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAAACACGGATGGCTCT
R:
AGCAGTAAAACAGTGGAATGCA
Band lengths:
202-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]