RnoEX0081875 @ rn6
Exon Skipping
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11442397-11445134:-
Coord C1 exon
chr3:11444967-11445134
Coord A exon
chr3:11444292-11444442
Coord C2 exon
chr3:11442397-11444206
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGGATCCCATTTCCCTCTAGACA
3' ss Score
8.12
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGCCAGTACTCGGGAATGCTGGACTGTGCCAAGAGGATCCTGGCTAAAGAGGGTGTGGCTGCCTTCTATAAAGGCTACATCCCCAACATGCTGGGGATCATCCCGTATGCGGGCATCGATCTAGCTGTCTATGAG
Seq A exon
ACATTGAAAAATACCTGGCTACAGCGCTATGCTGTAAACAGTGCAGACCCTGGCGTGTTTGTTCTCCTGGCCTGTGGCACAATCTCCAGTACCTGTGGCCAACTGGCCAGCTACCCACTAGCCCTGGTCAGGACTCGGATGCAGGCACAAG
Seq C2 exon
CCTCCATTGAGGGTGCACCTGAGGTAACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACTGAGGGGGCCTTTGGGCTCTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATTCCAGCTGTGAGCATCAGCTACGTGGTCTACGAGAACCTGAAGATCACCCTGGGCGTGCAGTCTCGGTGACGGGAGGGTGGCGGACTTGGTGACCCTGGGCTGCAGCCCAGGGTGTGCAGCCGCCTCATTCTGTGAATGTGCCAACACTAAGCTGACTTACCCAAGCTGTGAAACCCAGGATGCTGCAGGGGACGGGCAGGGAGCTGCAAGCGCTGGGCTGGTCCTGCTGACCTGGCAGACCTTTGTGTCTCTTCCAAGGAAGACCTGTGGACATTCCTTGGGGTCCAGGGGTCAGTAAGATGTGGGCTCCTGCACCTAGAGACAGGACGTTTTCCACAGTGCCTGCCAGGTAGCGAGCTTGGATGCCAGCTTAGCTCTTCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338-'16-12,'16-10,18-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGAGGATCCTGGCTAA
R:
GCTGATGCTCACAGCTGGAAT
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]