BtaEX6046329 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98757727-98760803:+
Coord C1 exon
chr11:98757727-98757894
Coord A exon
chr11:98758481-98758631
Coord C2 exon
chr11:98758734-98760803
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCCCCCCTGTACCCTTGCAGACA
3' ss Score
9.55
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTCCTGAAGACCCGGATGGCCCTGCGCAAGACAGGCCAGTACTCGGGCATGTTGGACTGTGCCAGGAAGATCCTGGCCCGAGAGGGCATGGCCGCCTTCTACAAAGGCTACGTCCCCAACATGCTGGGCATCATCCCCTACGCTGGCATAGACTTGGCCGTCTACGAG
Seq A exon
ACACTCAAGAATGCCTGGCTGCAGCGCTATGCAGTGAACAGTGCAGACCCTGGTGTGTTTGTGCTCCTGGCCTGTGGCACCATGTCCAGCACCTGTGGCCAGCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCCCAAG
Seq C2 exon
CCTCCATGGAGGGTGCTCCCGAGGTGACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACCGAGGGGGCCTTCGGCCTGTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATCCCGGCCGTGAGCATCAGCTACGTGGTGTACGAGAACCTGAAGATCACCCTGGGCGTGCAGTCGCGGTGACAGGCGGGGGGCCAGCCGCCCGTGCAGACTCCCTGATCCCGGGCTTCCAGCCCTGGGATGTGTAGCCATCTCATTCTGTGAATGTACCAACACTACGCTGACTGAAGCCAAGCTGTGAAAACCCTGGGGTGCGACCGCAAGTTGGGGGGACAGAGCTGGCAGGCCACCGGGTGCGTCCTGCTGACCCCGGCCGACCCGCGTGTCCATTCCAGGGAGGACCTGTGAGTGTTCCTCAGGGCCCAGGGCTCAGCAGGACATGGGCCCGAGCGCTTGGGGGCTGAACGCTGCCCAGGGGCGCCTGCGGAAGAGCAGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912-'13-11,'13-8,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTCGGGCATGTTGGACTG
R:
GCCGGGATCACCTTCATGAAG
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]