DreEX6011618 @ danRer10
Exon Skipping
Gene
ENSDARG00000035468 | slc25a25b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
Coordinates
chr5:31204716-31206460:+
Coord C1 exon
chr5:31204716-31204883
Coord A exon
chr5:31205994-31206144
Coord C2 exon
chr5:31206255-31206460
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTCCTATTTTTTCCTGTAGACA
3' ss Score
8.83
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTTTAAAGACTCGTCTTGCTCTGGGAAGGACGGGTCAGTACTCGGGAATTGCAGACTGTGCTAAACATATTTTTAAGAAGGAGGGCATGACAGCTTTCTATAAGGGTTACATTCCCAATATGCTGGGTATCATCCCTTATGCTGGAATAGACCTGGCTGTTTATGAG
Seq A exon
ACACTGAAGAACTCATGGCTGCAGAGGTTTGCCACAGACAGCGCTGATCCGGGTGTGTTTGTGCTGCTAGCTTGTGGTACAATGTCCAGCACATGTGGACAGTTAGCGAGCTACCCGTTAGCCTTAGTGAGGACACGCATGCAGGCGCAAG
Seq C2 exon
CTTCTCAGGAAGGAAGTCCTCAGATGACCATGTCAGGACTCTTCAGACACATTGTACGGACAGAGGGCGCTATTGGACTCTATAGAGGCTTGGCACCCAATTTTATGAAGGTCATCCCTGCTGTTAGCATCAGCTATGTGGTCTATGAGAACTTAAAGATCACCCTTGGCGTTCAGTCCCGGTGAGAGAAACCTGAGCACTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035468-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCGTCTTGCTCTGGGAA
R:
AGAGTCCAATAGCGCCCTCTG
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]