MmuEX6100560 @ mm9
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32270007-32272779:-
Coord C1 exon
chr2:32272612-32272779
Coord A exon
chr2:32271929-32272079
Coord C2 exon
chr2:32270007-32271842
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTATCCCATCTCCCTCTAGACA
3' ss Score
10.3
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCCGGCATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCCCCAACATGCTGGGGATCATCCCCTATGCTGGCATCGACCTAGCTGTCTATGAG
Seq A exon
ACATTGAAAAATACCTGGCTCCAGCGCTACGCAGTAAACAGTGCAGACCCCGGTGTGTTCGTGCTCCTGGCCTGTGGTACTATCTCCAGTACTTGTGGCCAGCTGGCCAGCTACCCACTAGCCCTGGTCAGGACCCGGATGCAGGCACAAG
Seq C2 exon
CCTCCATTGAGGGCGCACCTGAGGTAACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACTGAGGGGGCCTTTGGGCTCTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATCCCGGCTGTGAGCATCAGCTACGTGGTCTACGAAAACCTGAAGATCACCCTGGGCGTGCAGTCTCGGTGACGGGAGGGTGGTGGACTTGGTGAGCCTGGGCTGCGGCCCAGGGTATGCAGCCACCTCATTCTGTGAATGTGCCAACACTAAGCTGACTTACCCAAGCTGTGAAACCCAGGATACCATAGGGGACGGGCAGGGAGCTGGCAAGCTCTGGGCTGGTTCTGCTGACCTGGCAGACCTTCGTGTCTCTTCCAAGGAAGACCTGTGGATGTTCCTTGGGGTTCAGGGGTCAGTAAGATGTAGGCTCCTGCACTAGAGACAGGACGTTTTCCTCAGTGCCTGCCAGATAGCGAGCTTGGATGCCAGCTTAGTTCTTCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGACAGTACTCCGGCAT
R:
CTTCATGAAGTTGGGGGCCAG
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: