RnoEX0081857 @ rn6
Exon Skipping
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9995123-10001962:+
Coord C1 exon
chr9:9995123-9995290
Coord A exon
chr9:9999278-9999428
Coord C2 exon
chr9:10001778-10001962
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCCTTTCTCTTCCAGACC
3' ss Score
12.74
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAGTACAAGGGGCTCCTGGACTGTGCAAGGCGAATCTTAGAGCGTGAAGGGCCACGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATTCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
Seq A exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCAGCTAACCCAGGCATTCTTGTGCTCCTGGCCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
Seq C2 exon
CCTCCATTGAGGGTGGCCCGCAGGTCTCCATGGTGGGTCTGCTTCGACACATCCTATCCCAGGAGGGTGTATGGGGCCTCTACCGGGGCATTGCCCCCAACTTCATGAAGGTCATTCCAGCTGTGAGCATCTCCTACGTGGTCTACGAGAACATGAAGCAGGCTCTGGGGGTCACATCCAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781-'11-28,'11-26,13-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGCGAATCTTAGAGCG
R:
ACCACGTAGGAGATGCTCACA
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]