HsaEX6092267 @ hg38
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6440064-6452479:-
Coord C1 exon
chr19:6452312-6452479
Coord A exon
chr19:6444151-6444301
Coord C2 exon
chr19:6440064-6442159
Length
151 bp
Sequences
Splice sites
3' ss Seq
TACTCCCTTCTCCACTCCAGACT
3' ss Score
6.26
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCTGAAGACGCGGCTGACCTTGCGCCGGACGGGCCAGTATAAGGGGCTGCTGGACTGCGCCAGGCGTATCCTGGAGAGGGAGGGGCCCCGTGCCTTCTACCGCGGCTACCTCCCCAACGTGCTGGGCATCATCCCCTATGCGGGCATCGACCTGGCCGTCTACGAG
Seq A exon
ACTCTGAAGAACTGGTGGCTTCAGCAGTACAGCCACGACTCGGCAGACCCAGGCATCCTCGTGCTCCTGGCCTGCGGTACCATATCCAGCACCTGCGGCCAGATAGCCAGTTACCCGCTGGCCCTGGTCCGGACCCGCATGCAGGCACAAG
Seq C2 exon
CCTCCATCGAGGGTGGCCCCCAGCTGTCCATGCTGGGTCTGCTACGTCACATCCTGTCCCAGGAGGGCATGCGGGGCCTCTACCGGGGGATCGCCCCCAACTTCATGAAGGTTATTCCAGCTGTGAGCATCTCCTATGTGGTCTACGAGAACATGAAGCAGGCCTTGGGGGTCACGTCCAGGTGAGGGACCCGGAGCCCGTCCCCCCAATCCCTCACCCCCCACACCTCAGCCACTGGAGACTGATGATCCAACCACAGGATCCCTACTCTTTGGCCACGAGATCCCAGTACCCAGATCCTGGATCCTAGACTCCTATGCCCCAACCATTGGGTCATGGGATCCCAGCATCCAGATCCTGGATCCTAGACTCCTATGCCCCAACCACTGGGTCATGCGATCCCCACCCTTCAGCCACTAGATCCCAGATCCCCCTGTAACCATAACTGTGGATCCCTTACTTCAGCAACTCAAGTCTGCTACCCTAACCACAAGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648_MULTIEX1-10/14=9-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(69.4=96.2)
A:
PF0015322=Mito_carr=PD(10.8=19.6),PF0015322=Mito_carr=PU(36.5=68.6)
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTATAAGGGGCTGCTGGA
R:
AACCTTCATGAAGTTGGGGGC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains