MmuEX0042926 @ mm9
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57173143-57177855:-
Coord C1 exon
chr17:57177748-57177855
Coord A exon
chr17:57174210-57174377
Coord C2 exon
chr17:57173143-57173290
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGGATCTCCTCCTGCTCCAGGTA
3' ss Score
8.57
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
TCTAAGAATTTCTTCTACGGTGTGCACTCATCCCAGCTCTTCCAGGAACGGGTCGTCGCAGGCTCCCTGGCTGTGGCCGTCTCCCAGACGCTCATAAACCCCATGGAG
Seq A exon
GTACTCAAGACTCGGCTGACCCTTCGCTTCACTGGCCAGTATAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAACGGGATGGTACCCGAGCCCTATACCGAGGCTACCTGCCCAACATGTTGGGCATCATCCCCTATGCTTGCACCGACCTAGCTGTTTATGAG
Seq C2 exon
CTACTCCAGTGCCTGTGGCAGAAGTTGGGCAGGGACATGAAGGACCCCAGTGGCCTCGTCAGCCTGTCATCTGTAACACTGTCCACGACCTGTGGCCAGATGGCCAGTTACCCACTGACTTTGGTGCGCACAAGGATGCAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486-'4-6,'4-5,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.3=72.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGGTGTGCACTCATCCC
R:
CTTGAGCCTGCATCCTTGTGC
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: