GgaEX1053084 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5432780-5433847:-
Coord C1 exon
chr17:5433740-5433847
Coord A exon
chr17:5433339-5433506
Coord C2 exon
chr17:5432780-5432930
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATTTAATCTTGTCTTCTAGGTT
3' ss Score
10.93
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATCAAGAGGTTCATTGGTACTGACCAGGAAATGCTGAGGATTCACGAGCGGCTGTTAGCTGGCTCTCTGGCTGGGGCCATCGCACAGAGCAGCATCTACCCGATGGAG
Seq A exon
GTTCTGAAAACACGGATGGCTCTGAGAAAGACAGGACAGTATTCAGGCATGTTGGATTGTGCCAAAAACATCCTTTCCAAGGAAGGAATGGCTGCCTTCTACAAAGGCTACATTCCCAACATGCTAGGAATCATTCCATATGCTGGGATTGACCTGGCAGTGTATGAG
Seq C2 exon
ACACTAAAAAATGCCTGGTTGCAACGCTATGCTGTCAACAGTGCTGACCCTGGAGTCTTTGTCCTCTTGGCCTGTGGCACCATATCCAGTACCTGCGGACAGCTTGCCAGTTACCCCCTGGCTCTTGTGAGGACACGCATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'10-15,'10-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(73.5=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGGTTCATTGGTACTGAC
R:
CATGCGTGTCCTCACAAGAGC
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]