BtaEX0032882 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98757520-98758631:+
Coord C1 exon
chr11:98757520-98757627
Coord A exon
chr11:98757727-98757894
Coord C2 exon
chr11:98758481-98758631
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACCCGCCCTGGGCTCTGCAGGTC
3' ss Score
8.9
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATCAAACGTCTCATTGGGAGTGACCAGGAGACTCTGAGGATTCACGAGAGGCTCGTGGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGTAGTATCTACCCGATGGAG
Seq A exon
GTCCTGAAGACCCGGATGGCCCTGCGCAAGACAGGCCAGTACTCGGGCATGTTGGACTGTGCCAGGAAGATCCTGGCCCGAGAGGGCATGGCCGCCTTCTACAAAGGCTACGTCCCCAACATGCTGGGCATCATCCCCTACGCTGGCATAGACTTGGCCGTCTACGAG
Seq C2 exon
ACACTCAAGAATGCCTGGCTGCAGCGCTATGCAGTGAACAGTGCAGACCCTGGTGTGTTTGTGCTCCTGGCCTGTGGCACCATGTCCAGCACCTGTGGCCAGCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912-'12-8,'12-7,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTCATTGGGAGTGACCA
R:
CCTGCATCCGGGTCCTGA
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development