GgaEX1053084 @ galGal4
Exon Skipping
Gene
ENSGALG00000005095 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr17:4797776-4798843:-
Coord C1 exon
chr17:4798736-4798843
Coord A exon
chr17:4798335-4798502
Coord C2 exon
chr17:4797776-4797926
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATTTAATCTTGTCTTCTAGGTT
3' ss Score
10.93
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATCAAGAGGTTCATTGGTACTGACCAGGAAATGCTGAGGATTCACGAGCGGCTGTTAGCTGGCTCTCTGGCTGGGGCCATCGCACAGAGCAGCATCTACCCGATGGAG
Seq A exon
GTTCTGAAAACACGGATGGCTCTGAGAAAGACAGGACAGTATTCAGGCATGTTGGATTGTGCCAAAAACATCCTTTCCAAGGAAGGAATGGCTGCCTTCTACAAAGGCTACATTCCCAACATGCTAGGAATCATTCCATATGCTGGGATTGACCTGGCAGTGTATGAG
Seq C2 exon
ACACTAAAAAATGCCTGGTTGCAACGCTATGCTGTCAACAGTGCTGACCCTGGAGTCTTTGTCCTCTTGGCCTGTGGCACCATATCCAGTACCTGCGGACAGCTTGCCAGTTACCCCCTGGCTCTTGTGAGGACACGCATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'12-15,'12-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGGTTCATTGGTACTGAC
R:
CATGCGTGTCCTCACAAGAGC
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]