MmuEX6100559 @ mm9
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32271929-32272973:-
Coord C1 exon
chr2:32272866-32272973
Coord A exon
chr2:32272612-32272779
Coord C2 exon
chr2:32271929-32272079
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACTTGACACTCTGATTGCAGGTT
3' ss Score
6.69
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGAAACGGCTTGTCGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTTGTGGCAGGCTCCTTGGCCGGAGCCATTGCCCAGAGTAGCATCTACCCAATGGAG
Seq A exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCCGGCATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCCCCAACATGCTGGGGATCATCCCCTATGCTGGCATCGACCTAGCTGTCTATGAG
Seq C2 exon
ACATTGAAAAATACCTGGCTCCAGCGCTACGCAGTAAACAGTGCAGACCCCGGTGTGTTCGTGCTCCTGGCCTGTGGTACTATCTCCAGTACTTGTGGCCAGCTGGCCAGCTACCCACTAGCCCTGGTCAGGACCCGGATGCAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'14-19,'14-17,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACGGCTTGTCGGTAGTG
R:
CCTGCATCCGGGTCCTGA
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: