RnoEX6016457 @ rn6
Exon Skipping
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11444292-11445329:-
Coord C1 exon
chr3:11445222-11445329
Coord A exon
chr3:11444967-11445134
Coord C2 exon
chr3:11444292-11444442
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCTTGATACTTTCCTTGTAGGTT
3' ss Score
8.86
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGAAACGCCTTGTTGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTAGTGGCAGGCTCCTTGGCTGGGGCCATTGCCCAGAGTAGCATCTACCCAATGGAG
Seq A exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGCCAGTACTCGGGAATGCTGGACTGTGCCAAGAGGATCCTGGCTAAAGAGGGTGTGGCTGCCTTCTATAAAGGCTACATCCCCAACATGCTGGGGATCATCCCGTATGCGGGCATCGATCTAGCTGTCTATGAG
Seq C2 exon
ACATTGAAAAATACCTGGCTACAGCGCTATGCTGTAAACAGTGCAGACCCTGGCGTGTTTGTTCTCCTGGCCTGTGGCACAATCTCCAGTACCTGTGGCCAACTGGCCAGCTACCCACTAGCCCTGGTCAGGACTCGGATGCAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338-'15-10,'15-9,16-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGTGATCAGGAGACGCT
R:
CTTGTGCCTGCATCCGAGTC
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]