RnoEX0081954 @ rn6
Exon Skipping
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10007771-10011619:+
Coord C1 exon
chr9:10007771-10007878
Coord A exon
chr9:10010704-10010871
Coord C2 exon
chr9:10011472-10011619
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGGACTCCTCCCGCCCCAGGTA
3' ss Score
6.51
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
TCCAGGAATTTCTTCTACGGTGTGCACACATCCCCGTCCTTCCAGGAACGGGTGGTCGCAGGCTCCCTGGCTGTGGCTATCTCCCAGACACTCATCAATCCCATGGAG
Seq A exon
GTACTCAAGACTCGACTGACCCTTCGCTTCACCGGGCAGTACAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAGCGGGACGGCACCCGAGCCCTCTACCGAGGCTACCTGCCCAACATGTTGGGCATCATACCCTACGCTTGTACTGACCTGGCTGTTTATGAG
Seq C2 exon
CTACTCCGGTGCTTGTGGCAGAAGTCGGGCAGGGACATGAAGGACCCCAGTGGCCTCGTCAGCCTGTCGTCTGTAACACTGTCCACGACCTGTGGTCAGATGGCCAGTTACCCACTGACTTTGGTGCGCACAAGGATGCAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853-'9-7,'9-6,12-7
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.3=72.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATTTCTTCTACGGTGTGCA
R:
ATCCTTGTGCGCACCAAAGTC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]