DreEX6017580 @ danRer10
Exon Skipping
Gene
ENSDARG00000024708 | slc25a23b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b [Source:ZFIN;Acc:ZDB-GENE-040724-220]
Coordinates
chr3:34096086-34100745:+
Coord C1 exon
chr3:34096086-34096199
Coord A exon
chr3:34098096-34098263
Coord C2 exon
chr3:34100595-34100745
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTCTGTTTCTCAGGTG
3' ss Score
11.29
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATCAAATGGCTGATCAGAGGCCGTAGGGAGGGAGGTACTCTGAGGGTTCAAGAACGCTTCATTGCTGGCTCTCTGGCTGGAGCTACAGCTCAGACCATCATCTACCCCATGGAG
Seq A exon
GTGTTGAAGACCCGTTTGACCCTTCGGAAGACTGGACAGTATTCTGGCATGGCAGACTGTGCCAAGCAGATACTGCGTAAAGAAGGAGTGCGTGCGTTCTATAAGGGCTATGTGCCCAACACACTTGGCATCATCCCTTATGCTGGCATTGATCTGGCTGTCTATGAG
Seq C2 exon
ACACTGAAGAACGCTTGGCTCCAGCGGTACTGTATGGGCTCGGCTGATCCAGGAGTTCTGGTGCTGCTGGCATGTGGCACTGTGTCCAGCACATGTGGACAGCTGGCTAGTTACCCACTCGCTTTAATCCGAACCCGCATGCAGGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024708-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.7=21.1),PF0015322=Mito_carr=PU(28.0=68.4)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATGGCTGATCAGAGGCC
R:
TGCATGCGGGTTCGGATTAAA
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]