HsaEX6092260 @ hg38
Exon Skipping
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25 member 41 [Source:HGNC Symbol;Acc:HGNC:28533]
Coordinates
chr19:6427103-6429831:-
Coord C1 exon
chr19:6429724-6429831
Coord A exon
chr19:6427334-6427501
Coord C2 exon
chr19:6427103-6427250
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCCCGCCATCCTCAGGTG
3' ss Score
9.53
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
TGCAAGAATTACTTCTGTGGAATACAAGGGTCCCCGCCCTTCCAGGAGCGTCTCCTTGCTGGCTCCCTGGCTGTGGCCATCTCCCAGACCCTCATCAACCCCATGGAG
Seq A exon
GTGCTGAAGACGCGGTTGACCTTGCGTCGGACGGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCTTGCAGCGAGAGGGCACCCGCGCCCTTTACCGCGGCTACCTGCCCAATATGCTCGGCATCATCCCCTATGCCTGCACCGACCTGGCTGTCTATGAG
Seq C2 exon
ATGCTCCAGTGCTTCTGGGTGAAGTCAGGCAGGGATATGGGGGACCCCAGTGGCCTGGTCAGTCTGTCGTCTGTGACGCTATCCACGACCTGTGGCCAGATGGCCAGCTACCCACTGACTCTGGTGCGCACCAGGATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.009 C2=0.020
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(7.5=19.4),PF0015322=Mito_carr=PU(28.0=72.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.7=72.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAATACAAGGGTCCCC
R:
CTTGGGCCTGCATCCTGGT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains