HsaEX6092261 @ hg19
Exon Skipping
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6426050-6427512:-
Coord C1 exon
chr19:6427345-6427512
Coord A exon
chr19:6427114-6427261
Coord C2 exon
chr19:6426050-6426572
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCCCTTCTCTTGCAGATG
3' ss Score
13.07
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTGCTGAAGACGCGGTTGACCTTGCGTCGGACGGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCTTGCAGCGAGAGGGCACCCGCGCCCTTTACCGCGGCTACCTGCCCAATATGCTCGGCATCATCCCCTATGCCTGCACCGACCTGGCTGTCTATGAG
Seq A exon
ATGCTCCAGTGCTTCTGGGTGAAGTCAGGCAGGGATATGGGGGACCCCAGTGGCCTGGTCAGTCTGTCGTCTGTGACGCTATCCACGACCTGTGGCCAGATGGCCAGCTACCCACTGACTCTGGTGCGCACCAGGATGCAGGCCCAAG
Seq C2 exon
ATACCGTGGAGGGCTCAAATCCCACCATGCGCGGAGTCCTCCAGCGGATCCTGGCCCAGCAGGGCTGGCTAGGGCTGTACCGAGGCATGACCCCCACGCTACTGAAGGTCTTACCAGCAGGTGGCATCAGCTATGTGGTGTACGAAGCCATGAAGAAAACCCTGGGCATATAGGCTGTGAGCTGGACGACACAGCCTAGGCAGAAATGGGACAGGAGGACCTGATGACCCCTGGCCCCAAAGAGCCCTCGAGGCCTCAAGGTTCAGGCCCTGGGGCAGTTTTTGGTGGCAAAAGCAGGCTGGGGGTGGGGGTGGGGCTCTGGGTCAGAAGATTCCTGAAGCTGGGGTTGGTGGTGGGTGGAGGGGGGCAGTGCTGGGTCAGAAAACTCCTGGGACTCCCTCCCCAGGGTGCAGCCTGAGACAAGAAACGTGGACTCCAGTCTGGCCCCTTGTGGGTCGTCCTGGCTCCAGGGCGAAATGGTGAACATGTCACACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.020 C2=0.035
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.7=72.0)
C2:
PF0015322=Mito_carr=PD(60.2=96.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCCCCTATGCCTGCAC
R:
CCCATTTCTGCCTAGGCTGTG
Band lengths:
250-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)