DreEX0072301 @ danRer10
Exon Skipping
Gene
ENSDARG00000024708 | slc25a23b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b [Source:ZFIN;Acc:ZDB-GENE-040724-220]
Coordinates
chr3:34098096-34101057:+
Coord C1 exon
chr3:34098096-34098263
Coord A exon
chr3:34100595-34100745
Coord C2 exon
chr3:34100876-34101057
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTATAACCCTGTTCTCTCAGACA
3' ss Score
5.42
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGTTGAAGACCCGTTTGACCCTTCGGAAGACTGGACAGTATTCTGGCATGGCAGACTGTGCCAAGCAGATACTGCGTAAAGAAGGAGTGCGTGCGTTCTATAAGGGCTATGTGCCCAACACACTTGGCATCATCCCTTATGCTGGCATTGATCTGGCTGTCTATGAG
Seq A exon
ACACTGAAGAACGCTTGGCTCCAGCGGTACTGTATGGGCTCGGCTGATCCAGGAGTTCTGGTGCTGCTGGCATGTGGCACTGTGTCCAGCACATGTGGACAGCTGGCTAGTTACCCACTCGCTTTAATCCGAACCCGCATGCAGGCTCAGG
Seq C2 exon
CCTCAGCAGAAGGCGCTCCTCAGCTGTCGATGGTTGGTCAGTTCAAGCACATTGTGTCCCATGAGGGCGTTCCAGGACTGTACCGTGGCATCGCCCCCAATTTCCTCAAAGTCATTCCTGCTGTGAGCATCTCTTATGTGGTTTATGAGCATATGAAGAAAGCACTGGGAGTGGGATCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024708_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
C2:
PF0015322=Mito_carr=PD(61.1=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCGGAAGACTGGACAGT
R:
TTGAGGAAATTGGGGGCGATG
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]