HsaEX6093623 @ hg38
Exon Skipping
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450 family 4 subfamily F member 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr19:15529709-15537662:+
Coord C1 exon
chr19:15529709-15529853
Coord A exon
chr19:15537361-15537414
Coord C2 exon
chr19:15537535-15537662
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTTGCCCTCCACAGCTG
3' ss Score
11.28
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TACCTTCCAAATGAGGCGGGCCTTCAAGATGAGAAGAAGGTACTGGACAACATGCACCATGTACTCTTGGTATGGATGGGACCTGTCCTGCCGCTGTTGGTTCTGGTGCACCCTGATTACATCAAACCCCTTTTGGGAGCCTCAG
Seq A exon
CTGCCATCGCCCCCAAGGATGACCTCTTCTATGGCTTCCTAAAACCTTGGCTAG
Seq C2 exon
GGGATGGGCTGCTGCTCAGCAAAGGTGACAAGTGGAGCCGGCACCGTCGCCTGCTGACACCCGCCTTCCACTTTGACATCCTGAAGCCTTACATGAAGATCTTCAACCAGAGCGCTGACATTATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTGGACAACATGCACCA
R:
GCTCCACTTGTCACCTTTGCT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains