MmuEX6076815 @ mm10
Exon Skipping
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32470804-32481907:+
Coord C1 exon
chr17:32470804-32470948
Coord A exon
chr17:32481074-32481127
Coord C2 exon
chr17:32481780-32481907
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTTCTCTCTCCACAGCTG
3' ss Score
11.96
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TATCTTCCCAATGAGAAGGGCCTTCAAAACGAGAAGAAGGTGCTGGACACCATGCACCACATCATCCTGGCATGGGTTGGACCTTTCTTGCCTCTCCTGGTGCTTGTTCATCCTGATTACATCAAGCCTGTGTTGGGTGCCTCAG
Seq A exon
CTGCCATTGCACCCAAGGATGAGTTTTTCTATAGCTTCCTGAAGCCTTGGTTAG
Seq C2 exon
GGGATGGACTTCTGATCAGCAAAGGGAACAAATGGAGCCGGCACCGCCGCCTGCTCACACCTGCCTTCCACTTTGACATCCTGAAGCCCTACATGAAGATTTTCAACCAGTGCACGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126-'1-7,'1-3,6-7=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATGCACCACATCATCC
R:
CCGGCTCCATTTGTTCCCTTT
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types