RnoEX6030763 @ rn6
Exon Skipping
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14489201-14498844:+
Coord C1 exon
chr7:14489201-14489345
Coord A exon
chr7:14498038-14498091
Coord C2 exon
chr7:14498717-14498844
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCCGTTCCTCTCTCCACAGCTG
3' ss Score
12.11
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TATCTTCCCAACGAGAAGGGCCTTCAGAATGAGAAGAAAGTGCTGGATACCATGCACCACATCATCCTGGCATGGGTCGGACCTTTCCTGCCTCTGCTGGTGCTTGTGCATCCTGATTACATCAAGCCTGTGTTGGGTGCCTCAG
Seq A exon
CTGCCATTGCGCCCAAGGATGAGTTTTTCTATAGCTTCCTGAAACCTTGGTTAG
Seq C2 exon
GGGATGGGCTTTTGATCAGCAAAGGGAACAAATGGAGCCGGCACCGCCGTCTGCTCACGCCTGCCTTCCACTTTGACATCCTGAAGCCCTACATGAAGATTTTCAACCAGAGCGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478-'5-9,'5-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATACCATGCACCACAT
R:
CCGGCTCCATTTGTTCCCTTT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]