BtaEX6037225 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8641666-8648262:-
Coord C1 exon
chr7:8648118-8648262
Coord A exon
chr7:8641896-8641949
Coord C2 exon
chr7:8641666-8641793
Length
54 bp
Sequences
Splice sites
3' ss Seq
CACCTCTTCTCTCCCCACAGCTG
3' ss Score
12.15
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TATCTCCCAAATGAGAGAGGCCTCCAAGATGAGAAGAAGGTGCTGGACGACATGCACCACGTGATCCTCGTGTGGCTAGGGCCCGTCCTGCCACTGGTGGTTCTGGTGCACCCTGACTACATCAAGCCACTGGTGGGCGCCTCAG
Seq A exon
CTGCCGTTGCCCCCAAGGATGACCTTTTCTATGGCTTCCTGAAACCTTGGCTGG
Seq C2 exon
GAGATGGGCTGCTGCTCAGCAGAGGTGACAAGTGGAGCCGGCACCGCCGCCTGCTGACGCCTGCCTTCCATTTCGACATCCTGAAGCCCTACATGAAGATCTTCAACCAGTGCGCTGATACCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGCACCACGTGATCCTC
R:
TCCACTTGTCACCTCTGCTGA
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]