HsaEX6093786 @ hg38
Exon Skipping
Gene
ENSG00000160113 | NR2F6
Description
nuclear receptor subfamily 2 group F member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr19:17235499-17244504:-
Coord C1 exon
chr19:17244233-17244504
Coord A exon
chr19:17240671-17240765
Coord C2 exon
chr19:17235499-17236065
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGGCTTCTGTGTGCCCCCAGGTC
3' ss Score
12.33
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CGGCCGCGCGGATCGATACGGCGCGCCCTTGGGGTCAAATATCACTTCCAAAGTCGCTGTGGCTACGGAGGCGGCAGACGGAGGGAGGCTGGGGTGGCACGGGGCGGCCTTCTTCGCATGAGGGGCCCAGCGGTGGGGGTGGGGGTGGGAGCTGGGCTTGCCCATCTCAGGGAACCCCTCTGGGCTCACTCTGGGCCTTGGGTCACCGGAAATCGCCACTGGAAGGCCGGCAGGGCCACCGGAATTGACTGAAACGTCCCTCTCCCCCAGGG
Seq A exon
GTCCAACCGTGACTGCCAGATCGACCAGCACCACCGGAACCAGTGCCAGTACTGCCGTCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAGG
Seq C2 exon
CGGTGCAGCGCGGCCGCATCCCGCACTCGCTGCCTGGTGCCGTGGCCGCCTCCTCGGGCAGCCCCCCGGGCTCGGCGCTGGCGGCAGTGGCGAGCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCCGAACTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCTGCGGCGGCCGGACGCTTCGGCGCAGGGGGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTGAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCCCTGCACACGGCGCCGCTACTGGCCGCCGCCGGCCTCCACGCCGCGCCTATGGCCGCCGAGCGCGCCGTGGCTTTCATGGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160113-'1-4,'1-3,2-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.079 C2=0.032
Domain overlap (PFAM):
C1:
NA
A:
PF0010513=zf-C4=PD(42.9=90.9)
C2:
PF0010425=Hormone_recep=PU(65.0=62.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGAAACGTCCCTCTCCC
R:
GCAGCTGCGCGATCAGTTC
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains