BtaEX6037041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011136 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr7:5781793-5789941:+
Coord C1 exon
chr7:5781793-5782076
Coord A exon
chr7:5785643-5785737
Coord C2 exon
chr7:5789357-5789941
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTGCATGCCCACAGGTC
3' ss Score
10.31
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGGCCATGGTGACCGGCGGCTGGGGCGGCCCCGGGGGCGGCGGCGACACGAATGGCGTGGACAAGGCGGGCGGCTACCCGCGCGCGGCGGAGGAAGATTCGGCCTCACCCCCCGGTGCCGCCAGCGACGCTGAGCCAGGCGACGAGGAGCGGCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGCGGAGCATCCGCCGCAACCTCAGCTACACCTGCCG
Seq A exon
GTCTAACCGTGACTGCCAGATCGACCAGCATCACCGGAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAAG
Seq C2 exon
CGGTGCAGCGCGGCCGAATTCCGCACTCGCTACCGGGCACTGTGGCAGCCTCCTCGGGCAGCCCTCCTGGCTCTGCGCTGGCCGTGGCCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCGGAGCTGATCGCGCAGCTGCTGCGTGCCGAGCCCTATCCCGCGGCGGCCGGGCGCTTCGGTGCAGGAGCCGCGGGCGCTTTCGGAGCCGGGAGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAATGTGTGTGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTCAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCAGCGCTGCCCCTGCACACGGCGCCGCTGCTGGCCGCCGCCGGCCTGCATGCCGCGCCCATGGCCGCCGAGCGTGCCGTGGCCTTCATGGACCAGGTGCGCGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011136-'1-1,'1-0,5-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.1)
A:
PF0010513=zf-C4=PD(42.9=90.9)
C2:
PF0010425=Hormone_recep=PU(65.0=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGCTACACCTGCC
R:
CGGGATAGGGCTCGGCAC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]