GgaEX1040293 @ galGal3
Exon Skipping
Gene
ENSGALG00000002093 | F1P0M4_CHICK
Description
NA
Coordinates
chr10:770822-771850:+
Coord C1 exon
chr10:770822-770972
Coord A exon
chr10:771416-771519
Coord C2 exon
chr10:771596-771850
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGTATCACCTCTCCCCGCAGGTG
3' ss Score
10.62
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GACTGAACCCAGCCCCTGGCAAGGCACTGAGCCCCGTACTGCTGTGCAAGGTGTGCGGGGACACCAGCAGTGGGAAGCACTACGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGCGCAGCGTCCGCAGGAAGCTCATCTACAG
Seq A exon
GTGCCAGGCAGGGACGGGGCTGTGCCCAGTGGACAAGGCACACCGCAACCAGTGCCAGGCATGCCGGCTCAAGAAGTGCCTGCAAGCCGGCATGAACAAGGATG
Seq C2 exon
CTGTGCAGAACGAGCGCCAGCCCCGGAGCACAGCCCAGGTCCGGCTAGACAGCATTGAGCTGGACGCCGAGCTGCCCCCGGAGCACGTGGCTGCCACGCGTGATGTCCCCCCGGTTCCCTGCCCGGCCCCCCGTGGCCATGGGGCTACTGCTGCCACCGCTGCCGTCCCCCGCACGCCCACACCACCCACCAACCACCGCTTCATGGCCAGCCTGATGACGGCCGAGACCTGCGCCAAGCTGGAGCCCGAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.111 C2=0.872
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=72.5)
A:
PF0010513=zf-C4=PD(46.5=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTGCAGTGGCTTCTTC
R:
GTGGTTGGTGGGTGGTGTG
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]