DreEX6102534 @ danRer10
Exon Skipping
Gene
ENSDARG00000045904 | nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:ZFIN;Acc:ZDB-GENE-041114-63]
Coordinates
chr25:22177623-22178321:+
Coord C1 exon
chr25:22177623-22177773
Coord A exon
chr25:22177862-22177965
Coord C2 exon
chr25:22178049-22178321
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTGAACAATTGCAGATG
3' ss Score
6.95
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTAAAAGCCCAGCTCCTGGAAAGGTCCTGAACACGGGACTTCTTTGTAAAGTGTGTTCTGACACCAGCAGTGGGAAACACTATGGAATATACGCTTGCAACGGTTGCAGTGGCTTTTTCAAGCGCAGTGTGAGGCGCAGACTCATCTACAG
Seq A exon
ATGTCAGGCTGGTACAGGCATGTGTCCTGTGGATAAAGCCCATCGAAATCAGTGCCAGGCCTGTCGCTTAAAGAAATGCCTTCAAGCTGGAATGAACAAGGATG
Seq C2 exon
CTGTTCAGAATGAACGTCAGCCCCGCAGCACTGCACAAGTCAGATTAGATGCATTGGATGTGGACAAGGACAAGGAGCACCTCGCCACAACCTTGGAGCCCACCTCCTCATCCACCTGCTCTGTCATCAGCCGCCCACTGCTGGGCTCCTCCATCAGCTCCAGCATCAGCTCCACAGATGGTAGCCAACACTCCAACAGTCCCAAAAATGGACACCGCTTTATGGCCAGTCTGATGACAGCTGAGACTTGCGCAAAGCTGGAACCAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045904-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.111 C2=0.587
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=72.5)
A:
PF0010513=zf-C4=PD(46.5=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTTCAAGCGCAGTGTGA
R:
TTGGGACTGTTGGAGTGTTGG
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]