RnoEX6036082 @ rn6
Exon Skipping
Gene
ENSRNOG00000050690 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:RGD Symbol;Acc:2318602]
Coordinates
chr8:64799181-64799876:-
Coord C1 exon
chr8:64799750-64799876
Coord A exon
chr8:64799513-64799616
Coord C2 exon
chr8:64799181-64799402
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGAGCTTGTGTCCTCTGCAGGTG
3' ss Score
8.67
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTGGGTCCCTCGCTCCAGTGCCGAGTGTGTGGGGACAGCAGCAGTGGGAAGCACTATGGCATCTATGCCTGCAATGGCTGCAGCGGCTTCTTCAAGAGGAGTGTGAGACGGAGGCTCATCTACAG
Seq A exon
GTGCCAGGTAGGGGCAGGAATGTGCCCAGTGGATAAGGCCCATCGAAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
Seq C2 exon
CTGTACAGAATGAGCGCCAACCTCGAAGCCTGGCTCAGGTCCACCTGGAGAGCATGGAACCAGGCAGTGATCCCCGACCAGAACCGGTGGTGGCCTCTCCTGCCTTGGCAGGGCCCAGTCCCCGGGGCCCCACATCTGTATCTGCAGCCAGAGCCATGGGTCACCACTTTATGGCCAGCCTCATCTCTGCTGAGACATGTGCTAAGCTGGAGCCAGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050690-'5-4,'5-2,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.707
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=86.0)
A:
PF0010513=zf-C4=PD(46.5=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGGGAAGCACTATGG
R:
CATGGCTCTGGCTGCAGATAC
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]