BtaEX6051314 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014236 | NR2E3
Description
Bos taurus nuclear receptor subfamily 2, group E, member 3 (NR2E3), mRNA. [Source:RefSeq mRNA;Acc:NM_001167900]
Coordinates
chr10:18632352-18633112:+
Coord C1 exon
chr10:18632352-18632478
Coord A exon
chr10:18632670-18632773
Coord C2 exon
chr10:18632864-18633112
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGGCTCCCCTCCACCCGCAGGTG
3' ss Score
11
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCGTGGGCCCCTCGCTCCAGTGCCGCGTGTGTGGGGACAGCAGCAGCGGGAAGCACTATGGCATCTACGCCTGCAACGGCTGCAGCGGCTTCTTCAAGAGGAGCGTGAGGCGAAGGCTCATCTACAG
Seq A exon
GTGCCAGGTGGGGGCAGGGATGTGCCCGGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTGCAGGCGGGCATGAACCAGGATG
Seq C2 exon
CCGTGCAGAATGAGCGCCAGCCACGGAGCACCGCCCAGGTCCGAATGGACAGCGTGGAGTCAGAAACGGAGCCCCGGCTGCAGCCCCTGGCGACCCCGCCGGCCCTCGCAGGGCCCAGCTCTCGGGGGCCCACACCTGTCTCTGCAGCCAGAGCCCTGGGACCCCAGGCCCTCATGCCTCCGGGGCACCACCACTTCATGGCCAGCCTGATAACAGCTGAAACCTGCACTAAGCTGGAGCCCGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014236-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.762
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=86.0)
A:
PF0010513=zf-C4=PD(46.5=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGCTTCTTCAAGAGGAG
R:
TATCAGGCTGGCCATGAAGTG
Band lengths:
257-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]