GgaEX1040293 @ galGal4
Exon Skipping
Gene
ENSGALG00000002093 | NR2E3
Description
photoreceptor-specific nuclear receptor [Source:RefSeq peptide;Acc:NP_989925]
Coordinates
chr10:897206-898234:+
Coord C1 exon
chr10:897206-897356
Coord A exon
chr10:897800-897903
Coord C2 exon
chr10:897980-898234
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGTATCACCTCTCCCCGCAGGTG
3' ss Score
10.62
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GACTGAACCCAGCCCCTGGCAAGGCACTGAGCCCCGTACTGCTGTGCAAGGTGTGCGGGGACACCAGCAGTGGGAAGCACTACGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGCGCAGCGTCCGCAGGAAGCTCATCTACAG
Seq A exon
GTGCCAGGCAGGGACGGGGCTGTGCCCAGTGGACAAGGCACACCGCAACCAGTGCCAGGCATGCCGGCTCAAGAAGTGCCTGCAAGCCGGCATGAACAAGGATG
Seq C2 exon
CTGTGCAGAACGAGCGCCAGCCCCGGAGCACAGCCCAGGTCCGGCTAGACAGCATTGAGCTGGACGCCGAGCTGCCCCCGGAGCACGTGGCTGCCACGCGTGATGTCCCCCCGGTTCCCTGCCCGGCCCCCCGTGGCCATGGGGCTACTGCTGCCACCGCTGCCGTCCCCCGCACGCCCACACCACCCACCAACCACCGCTTCATGGCCAGCCTGATGACGGCCGAGACCTGCGCCAAGCTGGAGCCCGAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.111 C2=0.872
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=72.5)
A:
PF0010513=zf-C4=PD(46.5=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTGCAGTGGCTTCTTC
R:
GTGGTTGGTGGGTGGTGTG
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]