RnoEX0060865 @ rn6
Exon Skipping
Gene
ENSRNOG00000016892 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:RGD Symbol;Acc:621685]
Coordinates
chr16:19771694-19777414:-
Coord C1 exon
chr16:19776922-19777414
Coord A exon
chr16:19774330-19774424
Coord C2 exon
chr16:19771694-19772218
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACCCTGGCCTGTGTCTCCAGGTC
3' ss Score
10.16
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTGGCCTGGAACCGGCCCGACCAGTTCCTGCCTGGCGCGCGGACCGGCCGCAGGAAGTTGCCGCAAAACTTTTTTTGGGGGGGTGCGACCGGAGCCCCCGAGCGCGCGGGCTGCATGCGCCCGGGATAGCCGGGTTCCCCTCGGGTCGCCAGGCGTGCCCAGAGGGGACGGACTCGTCCCGGGGCGCCCCGGCCCCGCTGTCCCCGGGGCTATGGCCATGGTGACCGGTGGCTGGGGCGGCCCCGGAGGCGACACGAACGGCGTGGACAAGGCAGGTGGGAGCTACCCACGCGCGACCGAGGACGACTCGGCCTCGCCTCCCGGGGCGACTAGCGACGCGGAGCCGGGTGACGAGGAGCGTCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCCAGCGGCAAGCACTACGGCGTGTTCACCTGCGAGGGCTGCAAGAGTTTCTTCAAGCGCAGCATCCGCCGCAATCTCAGCTACACCTGCCG
Seq A exon
GTCCAACCGTGACTGTCAGATTGATCAGCATCACCGGAACCAGTGTCAGTACTGTCGCCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
Seq C2 exon
CGGTGCAGCGCGGCCGCATCCCGCACGCTCTCCCGGGTCCCGCGGCCTGCAGCCCTCCGGGCGCGGCGGGAGTCGAGCCGTTCGCGGGGCCGCCGGTGTCCGAGCTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCCGCGGCTGGGCGCTTTGGTGGCGGCGGCGCCGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGCCTACTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCGGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGCGAGCTGTTCGTGCTGAACGCGGCGCAGGCGGCGCTACCGCTGCACACGGCACCGCTGCTGGCTGCCGCGGGGCTGCACGCCGCGCCCATGGCTGCGGAGCGCGCGGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCCGAGTACGGCTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016892_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.5)
A:
PF0010513=zf-C4=PD(42.9=90.9)
C2:
PF0010425=Hormone_recep=PU(65.0=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACTGCGTGGTGTG
R:
GGGAGAGCGTGCGGGATG
Band lengths:
154-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]