Special

DmeEX0009768 @ dm6

Exon Skipping

Gene
Description
The gene seven up is referred to in FlyBase by the symbol Dmelsvp (CG11502, FBgn0003651). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is 3R:12258737..12302785. Its molecular function is described by 9 unique terms, many of which group under: transcription regulator activity; protein binding; DNA-binding transcription factor activity; binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 18 unique terms, many of which group under: regulation of biological quality; chemical homeostasis; organic substance biosynthetic process; cardiac cell fate commitment; locomotion. 72 alleles are reported. The phenotypes of these alleles manifest in: 7-1M; subesophageal ganglion neuron; intracellular organelle; abdominal larval oenocyte group; mechanosensory system. The phenotypic classes of alleles include: developmental rate defective; phenotype; cell number defective; immune response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 06-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages.
Coordinates
chr3R:12281110-12294559:+
Coord C1 exon
chr3R:12281110-12282249
Coord A exon
chr3R:12290209-12290358
Coord C2 exon
chr3R:12294008-12294559
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCGAATGTTTTCCCTTTCAGGTT
3' ss Score
12.05
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TCACCTGCACGCCGCCTCCGCCGGACCGGGCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGCAGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCCCAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATCTGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCACTCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTCCGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCATCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCGAATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAAGCAGAACATCGAGTGCGTCGTCTGCGGCGACAAGAGTTCCGGCAAGCACTACGGACAATTTACCTGCGAAG
Seq A exon
GTTGCAAATCTTTCTTCAAGCGCTCGGTGCGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGATCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCAAAATGGGCATGAGACGCGAAG
Seq C2 exon
CTGTTCAACGTGGACGCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0003651-'1-5,'1-4,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.831 A=0.048 C2=0.103
Domain overlap (PFAM):

C1:
PF0010513=zf-C4=PU(30.0=9.6)
A:
PF0010513=zf-C4=PD(68.6=94.1)
C2:
PF0010425=Hormone_recep=PU(67.5=71.9)


Main Inclusion Isoform:
FBpp0082035


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0082034, FBpp0082036, FBpp0303610


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCAGCATCAAGGGACAG
R:
CCCGTTGGCAATCTGGTACTG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)