DreEX6027008 @ danRer10
Exon Skipping
Gene
ENSDARG00000003607 | nr2f6a
Description
nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
Coordinates
chr2:24720353-24726563:+
Coord C1 exon
chr2:24720353-24720961
Coord A exon
chr2:24721041-24721135
Coord C2 exon
chr2:24725994-24726563
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTGGTGCCTTTCAGATC
3' ss Score
10.11
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CGCTGGCTAAAGAAGAAAGTTAACTGACACAGACACACACAAGTGACTCAGAACTCGTGTCTGAGCCTAAATGTGTCAGACGAAGCTGCGGACAATTACCAGATCCAGAGGCCTTCATATCTTCTCATTTTAGAACACGCAGCTGTCAAAAAAAGGGGTCAAGTGAAACTGTCTGTGCCGACAGCACGTTTGGGAGTATCATTCTTCCTCGGTTGTGCTGAGAACTAAGCGATGGCCATGGTGAGAGGGGGGTGGGGAGATCCCAACGGGGAAACAAATGGACTTGGTGACAAGGGTTACCTGAGGGGAGATGAAGATGACGGGTCACCGCAAGGAGGCGGCAGCGACATGGAGGCCGGTGAGGATGATAAGGGATGTGTGGTGGACTGTGTTGTCTGCGGCGACAAGTCCAGCGGGAAACACTATGGTGTGTTCACCTGTGAGGGCTGCAAGAGCTTCTTTAAACGAAGTGTCAGACGAAACCTTAACTACACCTGCAG
Seq A exon
ATCAAACCGAGACTGCCAAATTGACCAGCATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGTAAAGAAG
Seq C2 exon
CAGTTCAGCGTGGACGGATCCCACCTTCACATTCGAGCCTGAGCCCATCTACAACTCCAGTAGGCGGTAATGCCGGCGGTGGTGTGAGCGAGTTCTACAATGGGCAGCCGGTGTCCGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCACCAGTACAACCAGCAGATGCAAGGCGGTGGTGGCGGTGGATCTGGCATGGGCATCGACAGCATCTGTGAGCTCGCTGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCGTACTTCCCCGAATTGCCAGTATCGGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTGAACGCAGCTCAATCTGCCCTGCCACTGCACATGGCCCCGCTGCTGGCCGCCGCAGGCTTCCACTCCTCACCCATGTCCGCGGAAAGGGTGGTGTCCTTCATGGACCAGGTGCGCGTCTTCCAGGACCAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003607-'5-6,'5-4,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.408 A=0.000 C2=0.168
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=43.3)
A:
PF0010513=zf-C4=PD(42.9=90.9)
C2:
PF0010425=Hormone_recep=PU(65.0=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTGGACTGTGTTGTC
R:
AGTTGTAGATGGGCTCAGGCT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]