HsaEX6093786 @ hg19
Exon Skipping
Gene
ENSG00000160113 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:7977]
Coordinates
chr19:17346308-17356151:-
Coord C1 exon
chr19:17355752-17356151
Coord A exon
chr19:17351480-17351574
Coord C2 exon
chr19:17346308-17346874
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGGCTTCTGTGTGCCCCCAGGTC
3' ss Score
12.33
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGCAGCCCGTGCCCCCCGCGCGCCGGGGCCGAATGCGCGCCGCGTAGGGTCCCCCGGGCCGAGAGGGGTGCCCGGAGGGAAGAGCGCGGTGGGGGCGCCCCGGCCCCGCTGCCCTGGGGCTATGGCCATGGTGACCGGCGGCTGGGGCGGCCCCGGCGGCGACACGAACGGCGTGGACAAGGCGGGCGGCTACCCGCGCGCGGCCGAGGACGACTCGGCCTCGCCCCCCGGTGCCGCCAGCGACGCCGAGCCGGGCGACGAGGAGCGGCCGGGGCTGCAGGTGGACTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCATTACGGTGTCTTCACCTGCGAGGGCTGCAAGAGCTTTTTCAAGCGAAGCATCCGCCGCAACCTCAGCTACACCTGCCG
Seq A exon
GTCCAACCGTGACTGCCAGATCGACCAGCACCACCGGAACCAGTGCCAGTACTGCCGTCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAGG
Seq C2 exon
CGGTGCAGCGCGGCCGCATCCCGCACTCGCTGCCTGGTGCCGTGGCCGCCTCCTCGGGCAGCCCCCCGGGCTCGGCGCTGGCGGCAGTGGCGAGCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCCGAACTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCTGCGGCGGCCGGACGCTTCGGCGCAGGGGGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTGAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCCCTGCACACGGCGCCGCTACTGGCCGCCGCCGGCCTCCACGCCGCGCCTATGGCCGCCGAGCGCGCCGTGGCTTTCATGGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160113-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(55.7=41.9)
A:
PF0010513=zf-C4=PD(42.9=90.9)
C2:
PF0010425=Hormone_recep=PU(65.0=62.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAACCTCAGCTACACCTG
R:
GCAGCTGCGCGATCAGTTC
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)