HsaEX6095855 @ hg19
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48042962-48044208:-
Coord C1 exon
chr19:48044150-48044208
Coord A exon
chr19:48043433-48043592
Coord C2 exon
chr19:48042962-48043135
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGCCATGTCCCACAGTAA
3' ss Score
8.1
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGTGGCAGGCAGAGG
Seq A exon
TAACCAGCAAAACGGCAGTCCCACAGACTGGACGAAGCCCAGGAGCACTTTTGTCTGCAAGAACTGCAGCCAGATGTTTTATACGGAGAAAGGGCTGAGCAGCCACATGTGTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGAACCGCAG
Seq C2 exon
GTGTTTGGCACAGAGTTTTGCAAGCCGCTAAGACAGGTGCTGAGGCCAGAAGGGGACAGGCATAGTCCCCCAGGAACCAAGAAGCCCTTGGACCCCACAGCTGCAGCCCCTTTGGTGGTCCCCCAATCGATCCCCGTGGTTCCAGTGACCCGACACATAGGGAGCATGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-'3-6,'3-5,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=0.454 C2=0.665
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTACAGGCTCCCCCATC
R:
CATGGCCATGCTCCCTATGTG
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)