RnoEX0101515 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77977187-77979625:+
Coord C1 exon
chr1:77977187-77977245
Coord A exon
chr1:77977568-77977727
Coord C2 exon
chr1:77979307-77979625
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTCTCTATCAACAGCCA
3' ss Score
9.75
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTGGAAACATCTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
Seq A exon
CCATCAGCCAAATGGGACTCCCACAGATTGGATGGAGTCAAAGAGCACTTTTGTGTGCAAGAATTGCAGCCAGATGTTTTACACAGAGAAAGGGCTGAGCAGCCACATGTGTTTCCATAGTGACCAGTGGCCATCACCTCGAGGGAAGCAGGAGCAACAG
Seq C2 exon
GGACAAGAAAAAGACGGGGAAGAGAGAGACAGCAAGGAGAGCAGCCAATACAGAAAGAGGAAGAAGCGGCCCCAGCCCAAGGCCCTGTTTGCCCCTCCTGCACCCTCTGCCCTTGGGGAGCCAGGCCCAGGAGGGTGCCACCAGAGCTGCCTACGCTCTCCTGTGTTCCTGGTGGACCACCTCCTCAAGGGCTTGTTTCAGTGTTCTCCCTACACACCACCACCTATGCTTAGCCCAATTCGTGAGGGCTCCGGGCTGTACTTCAATACACTCTGCTCCACATCCAGGGCTGGGCCCCACCTTGTCAGCCCTGTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.481 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCCCCCATCCAGTGAAG
R:
AAACAAGCCCTTGAGGAGGTG
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]