MmuEX6008506 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16081678-16083572:+
Coord C1 exon
chr7:16081678-16081736
Coord A exon
chr7:16082052-16082211
Coord C2 exon
chr7:16083254-16083572
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTCTCTATCCACAGCCA
3' ss Score
10.91
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGTGGAAACATTTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
Seq A exon
CCATCAGCCAAATGGGGGTCCCACAGACTGGATGGAGTCAAAGAGCACTTTTGTGTGCAAGAATTGCAGCCAGATGTTTTACACCGAGAAAGGGCTGAGCAGCCACATGTGTTTCCATAGTGACCAGTGGCCATCACCTCGAGGGAAGCAGGAGCAACAG
Seq C2 exon
GGACAAGAAAAAGATGGGGAAGAGAGAGACAGCAAGGAGAGCTGCCAGTACAGAAAGCGGAAGAAGCGGCCCCAGCCCAAGGCCCTGTTTGCCCCTCCTGCACCCTCTGCCCTCGGGGAACCAGGCCCAGGAGGGTGCCACCAGAGCTGCCTGCACTCTCCTGTGTTCCTGGTGGATCACCTCCTGAAGGGCTTGTTTCAGTGCTCTCCCTACACACCACCGCCTATGCTTAGCCCGATTCGTGAGGGCTCTGGGCTGTACTTCAATACCCTCTGCTCCACATCCAGGGCTGGGCCCCACCTTATCAGCCCTGTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'13-17,'13-13,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.519 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCATCCAGTGAAGGAAGA
R:
GGTGTGTAGGGAGAGCACTGA
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types