HsaEX6095855 @ hg38
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47539705-47540951:-
Coord C1 exon
chr19:47540893-47540951
Coord A exon
chr19:47540176-47540335
Coord C2 exon
chr19:47539705-47539878
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGCCATGTCCCACAGTAA
3' ss Score
8.1
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGTGGCAGGCAGAGG
Seq A exon
TAACCAGCAAAACGGCAGTCCCACAGACTGGACGAAGCCCAGGAGCACTTTTGTCTGCAAGAACTGCAGCCAGATGTTTTATACGGAGAAAGGGCTGAGCAGCCACATGTGTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGAACCGCAG
Seq C2 exon
GTGTTTGGCACAGAGTTTTGCAAGCCGCTAAGACAGGTGCTGAGGCCAGAAGGGGACAGGCATAGTCCCCCAGGAACCAAGAAGCCCTTGGACCCCACAGCTGCAGCCCCTTTGGTGGTCCCCCAATCGATCCCCGTGGTTCCAGTGACCCGACACATAGGGAGCATGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-'8-9,'8-8,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=0.500 C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTACAGGCTCCCCCATC
R:
CATGGCCATGCTCCCTATGTG
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains