HsaEX6096947 @ hg19

Exon Skipping

Gene

ENSG00000141946 | ZIM3

Description

zinc finger, imprinted 3 [Source:HGNC Symbol;Acc:16366]

Coordinates

chr19:57645464-57649966:-

Coord C1 exon

chr19:57649840-57649966

Coord A exon

chr19:57648241-57648339

Coord C2 exon

chr19:57645464-57647463

Length

99 bp

Sequences

Splice sites

3' ss Seq

TGCGGTATCTTCCATCACAGGAC

3' ss Score

7.66

5' ss Seq

CAGGTAGGT

5' ss Score

10.28

Exon sequences

Seq C1 exon

GGAAGAGTGACCTTCGAGGATGTCACTGTGAACTTCACCCAGGGGGAGTGGCAGCGGCTGAATCCCGAACAGAGAAACTTGTACAGGGATGTGATGCTGGAGAATTACAGCAACCTTGTCTCTGTGG

Seq A exon

GACAAGGGGAAACCACCAAACCCGATGTGATCTTGAGGTTGGAACAAGGAAAGGAGCCATGGTTGGAGGAAGAGGAAGTGCTGGGAAGTGGCCGTGCAG

Seq C2 exon

AAAAAAATGGGGACATTGGAGGGCAGATTTGGAAGCCAAAGGATGTGAAAGAGAGTCTCGCAAGAGAAGTCCCATCAATCAATAAGGAAACGCTGACTACGCAGAAAGGTGTAGAATGTGACGGATCTAAGAAAATACTTCCACTGGGCATAGATGATGTATCTTCCTTGCAACACTATGTACAAAATAATTCTCACGATGATAATGGATACAGAAAATTAGTTGGCAATAATCCATCCAAATTTGTAGGACAACAACTGAAATGTAATGCCTGTAGAAAGTTATTCAGTTCAAAGTCACGCCTTCAAAGTCACCTGAGGAGGCATGCCTGTCAAAAACCCTTTGAATGTCATAGCTGTGGAAGAGCATTCGGGGAGAAGTGGAAGCTTGATAAACATCAGAAAACTCACGCAGAGGAAAGGCCCTATAAATGTGAGAACTGTGGAAATGCCTACAAGCAGAAGTCAAATCTCTTTCAACATCAGAAAATGCATACTAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000141946-'2-3,'2-2,3-3=AN

Average complexity

A_NA

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.209 A=0.559 C2=0.117

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)

Main Inclusion Isoform:

ENSP00000269834