RnoEX6047391 @ rn6

Exon Skipping

Gene

ENSRNOG00000014712 | Zfp39

Description

zinc finger protein 39 [Source:RGD Symbol;Acc:1306633]

Coordinates

chr10:45220282-45239179:-

Coord C1 exon

chr10:45239053-45239179

Coord A exon

chr10:45225503-45225595

Coord C2 exon

chr10:45220282-45223924

Length

93 bp

Sequences

Splice sites

3' ss Seq

ACACTATTTCCCATCAACAGGAC

3' ss Score

9.66

5' ss Seq

CAGGTCAGT

5' ss Score

8.94

Exon sequences

Seq C1 exon

GGCTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACGCTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGAAGCCTGGAGTCCTTGG

Seq A exon

GACACTGCGTGACCAAACCTGAGGTGATCTTTAAGTTGGAACAAGGAACTGGGCCATGGAGAGCAGAAGACATTCCAAAGCAGAGCCGACCAG

Seq C2 exon

ATGTCCGGAAAGTAAGGGAACTGAGTGAAACCAACCAGGACAATGAAGAGAGACACTTGTGGCACTTTGTAATTACCAACAGCAACACATCAACTCAGGAGAAAGTTAAATTAGGAAACATACTTAATGTGGGCTCAAACCGTGTTTCAAATCGGACTATAAAGAATGGAAACTCCTCAGGAATGAGGCCTGTGACACTTGGTGTATGGCAGAGCGCATCTCCCTCTAAAGAGCCCAGTGACTTGCCGACTGGAGAGGAACCTGACGGCTCTCTAACCAGCAAGCCCCCCATGCATGCAGAGCATCATGGGTTGTATAACAGAGCTCCAGGTACTGGACAGCATTTTCAATGTTGTAGGCAAGAAGCAACCTGCAGCACAAAGGCATTATGGACGAACAAGGGGTTTCACGTTGCCCATAGGTCTAGTAAGTTTTCCGAGTCCGAGAAAGCACCTGATGAGGTAGCCCTTAATGCCCAAGAGATGAGTTGGGTATGCAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000014712-'2-4,'2-3,3-4=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.023 A=0.406 C2=0.209

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)

Main Inclusion Isoform:

ENSRNOP00000019991