MmuEX6085669 @ mm9

Exon Skipping

Gene

ENSMUSG00000037001 | Zfp39

Description

zinc finger protein 39 [Source:MGI Symbol;Acc:MGI:99183]

Coordinates

chr11:58701655-58714193:-

Coord C1 exon

chr11:58714067-58714193

Coord A exon

chr11:58706464-58706556

Coord C2 exon

chr11:58701655-58705048

Length

93 bp

Sequences

Splice sites

3' ss Seq

ACATTATTTCCCATCAACAGGCC

3' ss Score

9.64

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGAGTCCTTGG

Seq A exon

GCCACTGCATTACCAAACCTGAGGTGATCTTTAAGCTGGAGCAAGGAGCTGAGCCATGGAGAGCAGAAGACGTCCCAAAGCAGAGCCGAGCAG

Seq C2 exon

ATGTACAGAAGATAACGGAACTGAACGAAACCAGCCAGGACAATGAAGAGAGACATCTGTGGCACCATGCAATTACCTACAGCAACAAGTCAACCGAGGAGAAAGTTAAATTAGGAAACATAGTTAATGTGAGCTCAAACTGTGTTTCAAATCTGACTGTAAAGAATGGAAACTCCTCAGGAATGAGGCCTGTGGCACTTACTGTGTGGCAGAGTGTCCTTCCCCCTAACAAGCCCGATGACACGAGGATTGGAGAGGAACTTGATGCCTCTCTAACTAGTGAGCCCCCCATACACGCAGAGCATCCTGGGTTGTATAGCAGAGCTCCAGGCACTGGACAGCAGTTTCAGTGTTGTATGCAAGAAGTGACCTGCAACACAAAGGCATTATGGACTAAGAGGTTTCACATTGCACATGGGTCCAGTAAGTTTGGCGAGTCCGAGAAAGTGCCTGATGAGGTAGCTCTTCATGCCCAAGACGTGAGCTGGGTACGGGCAGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000037001-'2-3,'2-2,3-3=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.281 C2=0.178

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF079757=C1_4=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)

Main Inclusion Isoform:

ENSMUSP00000099764