HsaEX6096947 @ hg38
Exon Skipping
Gene
ENSG00000141946 | ZIM3
Description
zinc finger imprinted 3 [Source:HGNC Symbol;Acc:HGNC:16366]
Coordinates
chr19:57134096-57138598:-
Coord C1 exon
chr19:57138472-57138598
Coord A exon
chr19:57136873-57136971
Coord C2 exon
chr19:57134096-57136095
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCGGTATCTTCCATCACAGGAC
3' ss Score
7.66
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAAGAGTGACCTTCGAGGATGTCACTGTGAACTTCACCCAGGGGGAGTGGCAGCGGCTGAATCCCGAACAGAGAAACTTGTACAGGGATGTGATGCTGGAGAATTACAGCAACCTTGTCTCTGTGG
Seq A exon
GACAAGGGGAAACCACCAAACCCGATGTGATCTTGAGGTTGGAACAAGGAAAGGAGCCATGGTTGGAGGAAGAGGAAGTGCTGGGAAGTGGCCGTGCAG
Seq C2 exon
AAAAAAATGGGGACATTGGAGGGCAGATTTGGAAGCCAAAGGATGTGAAAGAGAGTCTCGCAAGAGAAGTCCCATCAATCAATAAGGAAACGCTGACTACGCAGAAAGGTGTAGAATGTGACGGATCTAAGAAAATACTTCCACTGGGCATAGATGATGTATCTTCCTTGCAACACTATGTACAAAATAATTCTCACGATGATAATGGATACAGAAAATTAGTTGGCAATAATCCATCCAAATTTGTAGGACAACAACTGAAATGTAATGCCTGTAGAAAGTTATTCAGTTCAAAGTCACGCCTTCAAAGTCACCTGAGGAGGCATGCCTGTCAAAAACCCTTTGAATGTCATAGCTGTGGAAGAGCATTCGGGGAGAAGTGGAAGCTTGATAAACATCAGAAAACTCACGCAGAGGAAAGGCCCTATAAATGTGAGAACTGTGGAAATGCCTACAAGCAGAAGTCAAATCTCTTTCAACATCAGAAAATGCATACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141946_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.559 C2=0.117
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAATCCCGAACAGAGAA
R:
CTGCGTAGTCAGCGTTTCCTT
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains